2O0A

The structure of the C-terminal domain of Vik1 has a motor domain fold but lacks a nucleotide-binding site.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5278100 mM Na/MES/Acetate, pH 5.5, 24 % pentaerythritol ethoxylate (Mr 797), 300 mM NaCl, and 5% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
1.8834.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.524α = 90
b = 70.129β = 90
c = 79.861γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADE2005-11-20MMAD
21
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97885, 0.97885, 0.97896, 0.97118APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555099.30.0513.36.33829228.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.551.6198.80.3175.43742

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.65034969175999.350.2120.210.261RANDOM22.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.33-0.34-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.195
r_dihedral_angle_4_deg16.013
r_dihedral_angle_3_deg13.333
r_dihedral_angle_1_deg6.035
r_scangle_it2.407
r_scbond_it1.617
r_mcangle_it1.307
r_angle_refined_deg1.204
r_mcbond_it0.763
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.195
r_dihedral_angle_4_deg16.013
r_dihedral_angle_3_deg13.333
r_dihedral_angle_1_deg6.035
r_scangle_it2.407
r_scbond_it1.617
r_mcangle_it1.307
r_angle_refined_deg1.204
r_mcbond_it0.763
r_nbtor_refined0.308
r_symmetry_vdw_refined0.2
r_nbd_refined0.195
r_xyhbond_nbd_refined0.125
r_symmetry_hbond_refined0.106
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2209
Nucleic Acid Atoms
Solvent Atoms241
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction