2NDF

Solution NMR structures of AF9 yeats domain in complex with histon H3 acetylation at K18


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
23D HNCACB10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
33D CBCA(CO)NH10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
43D HNCO10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
53D 1H-15N NOESY10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
63D 1H-15N TOCSY10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT90% H2O/10% D2O7.4ambient298
73D 1H-13C NOESY aliphatic10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT100% D2O7.4ambient298
83D 1H-13C NOESY aromatic10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT100% D2O7.4ambient298
93D filtered 1H-13C NOESY aliphatic10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT100% D2O7.4ambient298
103D filtered 1H-13C NOESY aromatic10 mM sodium phosphate, 500 mM sodium chloride, 2 mM EDTA, 2 mM [U-100% 2H] DTT100% D2O7.4ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance800
2BrukerAvance900
3BrukerAvance600
4BrukerAvance500
NMR Refinement
MethodDetailsSoftware
distance geometry, simulated annealing, torsion angle dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIA2.3Linge, O'Donoghue and Nilges
2processingNMRPipe7.1Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift calculationNMRPipe7.1Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4peak pickingNMRView5.04 C-versionJohnson, One Moon Scientific
5chemical shift assignmentNMRView5.04 C-versionJohnson, One Moon Scientific
6data analysisNMRView5.04 C-versionJohnson, One Moon Scientific
7refinementTALOStalosn, talosplusCornilescu, Delaglio and Bax
8structure solutionCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
9geometry optimizationCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
10refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
11collectionTOPSPINBruker Biospin