2NCS
NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of dodecylphosphocholine micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.5 mM 10E8p, 20 mM [U-2H] DPC, 2 mM HEPES, 0.1 mM DSS | 90% H2O/10% D2O | 2 | 7 | ambient | 308 | |
2 | 2D 1H-1H NOESY | 0.5 mM 10E8p, 20 mM [U-2H] DPC, 2 mM HEPES, 0.1 mM DSS | 90% H2O/10% D2O | 2 | 7 | ambient | 308 | |
3 | 2D 1H-1H TOCSY | 0.5 mM 10E8p, 20 mM [U-2H] DPC, 2 mM HEPES, 0.1 mM DSS | 100% D2O | 2 | 7 | ambient | 308 | |
4 | 2D 1H-1H NOESY | 0.5 mM 10E8p, 20 mM [U-2H] DPC, 2 mM HEPES, 0.1 mM DSS | 100% D2O | 2 | 7 | ambient | 308 | |
5 | 2D 1H-13C HSQC aliphatic | 0.5 mM 10E8p, 20 mM [U-2H] DPC, 2 mM HEPES, 0.1 mM DSS | 100% D2O | 2 | 7 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | dihedral angle restraints | TALOS | Cornilescu, Delaglio and Bax | |
5 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | CYANA |