2NC7
Antimicrobial peptide protegrin PG-5
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 3 mg/mL PG, 20 mg/mL [U-99% 2H] DPC, 450 uL H2O, 50 uL [U-99% 2H] D2O | 90% H2O/10% D2O | 293 | ||||
2 | 2D 1H-1H NOESY | 3 mg/mL PG, 20 mg/mL [U-99% 2H] DPC, 450 uL H2O, 50 uL [U-99% 2H] D2O | 90% H2O/10% D2O | 293 | ||||
3 | 2D 1H-1H TOCSY | 3 mg/mL PG, 20 mg/mL [U-99% 2H] DPC, 450 uL H2O, 50 uL [U-99% 2H] D2O | 90% H2O/10% D2O | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | peak picking | Sparky | Goddard | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | chemical shift calculation | Sparky | Goddard | |
5 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH |