2NBF | pdb_00002nbf

Structure of calcium-bound form of Penicillium antifungal protein (PAF)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
22D 1H-13C HSQC1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
32D 1H-1H NOESY1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
43D 1H-15N NOESY1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
53D 1H-15N TOCSY1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
62D 1H-15N HSQC1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
72D 1H-1H NOESY1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion95% H2O/5% D2O0.025.8ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerDRX700
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.1Bruker Biospin
2processingTopSpin2.1Bruker Biospin
3structure solutionCYANA2.1Guntert, Braun and Wuthrich
4chemical shift assignmentATNOS-CANDIDHerrmann, Guntert and Wuthrich
5peak pickingATNOS-CANDIDHerrmann, Guntert and Wuthrich
6structure solutionATNOS-CANDIDHerrmann, Guntert and Wuthrich
7chemical shift assignmentCCPN_Analysis2.4CCPN
8refinementCYANA