2N9P | pdb_00002n9p

Solution structure of RNF126 N-terminal zinc finger domain in complex with BAG6 Ubiquitin-like domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
2	2D 1H-13C HSQC	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
3	3D HNCACB	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
4	3D CBCA(CO)NH	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
5	3D HNCO	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
6	3D HN(CA)CO	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
7	3D 1H-15N NOESY	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
8	3D 1H-13C NOESY	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
9	3D 12C14N filtered 13C edited NOESY	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
10	3D HCCH-TOCSY	600 uM [U-99% 13C; U-99% 15N] RNF126, 800 uM BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
11	2D 1H-15N HSQC	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
12	2D 1H-13C HSQC	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
13	3D HNCACB	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
14	3D CBCA(CO)NH	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
15	3D HNCO	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
16	3D HN(CA)CO	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
17	3D 1H-15N NOESY	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	90% H2O/10% D2O	0.12	6.0	ambient	298
18	3D 1H-13C NOESY	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
19	3D 12C14N filtered 13C edited NOESY	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298
20	3D HCCH-TOCSY	600 uM protein_1, 400 uM [U-99% 13C; U-99% 15N] BAG6, 10 mM potassium phosphate, 100 mM sodium chloride, 250 uM TCEP, 10 uM DSS	100% D2O	0.12	6.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Bruker	AVANCE	500

NMR Refinement
Method	Details	Software
simulated annealing	Refinement in water with default parametres	TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.2	Bruker Biospin
2	processing	TopSpin	3.2	Bruker Biospin
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	structure solution	ARIA	2.1	Linge, O'Donoghue and Nilges
6	refinement	ARIA	2.1	Linge, O'Donoghue and Nilges
7	chemical shift assignment	CcpNmr Analysis	2.3	CCPN
8	peak picking	CcpNmr Analysis	2.3	CCPN
9	structure solution	CcpNmr Analysis	2.3	CCPN