Chemical shift assignments and structure calculation of spider toxin pi-hexatoxin-Hi1a
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 2 | 3D 1H-13C NOESY aliphatic | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 3 | 3D 1H-13C NOESY aromatic | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 4 | 3D HNCO | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 5 | 3D HNCACB | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 6 | 3D CBCA(CO)NH | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 7 | 3D HBHA(CO)NH | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 8 | 3D 1H-15N NOESY | 300 uM [U-99% 13C; U-99% 15N] hi1a, 10 uM DSS, 0.02 % sodium azide, 20 mM MES | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with best stereochemical properties |
| Conformers Calculated Total Number | 30 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (best stereochemical properties) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 3.2 | Bruker Biospin |
| 2 | dihedral angle prediction | TALOS | Cornilescu, Delaglio and Bax | |
| 3 | chemical shift assignment | Sparky | Goddard | |
| 4 | peak picking | Sparky | Goddard | |
| 5 | chemical shift assignment | XEASY | Bartels et al. | |
| 6 | peak picking | XEASY | Bartels et al. | |
| 7 | processing nus data | Rowland_NMR_Toolkit | Hoch JC | |
| 8 | processing | Rowland_NMR_Toolkit | Hoch JC | |
| 9 | chemical shift assignment | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 10 | structure calculation | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 11 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |














