SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.3-1.2 mM [U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
22D 1H-13C HSQC aliphatic0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
32D 1H-13C HSQC aromatic0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
43D HNCA0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
53D HNCACB0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
63D CBCA(CO)NH0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
73D HNCO0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
83D HN(CO)CA0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
93D HCCH-TOCSY0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride100% D2O0.0857.0ambient293
103D 1H-15N NOESY0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
112D 1H-1H NOESY0.3-1.2 mM [U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride100% D2O0.0857.0ambient293
123D 1H-13C NOESY aliphatic0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
133D 1H-13C NOESY aromatic0.3-1.2 mM [U-100% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
142D 1H-1H TOCSY0.3-1.2 mM [U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride100% D2O0.0857.0ambient293
152D 1H-13C constant-time HSQC to obtain stereospecific assignments of Val/Leu methyls0.3 mM [U-10% 13C; U-100% 15N] Siglec, 20 mM potassium phosphate, 40 mM sodium chloride95% H2O/5% D2O0.0857.0ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE600
3BrukerAVANCE700
4BrukerAVANCE750
5BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.0Bruker Biospin
2data analysisTopSpin3.0Bruker Biospin
3processingTopSpin3.0Bruker Biospin
4chemical shift assignmentSparky3.114Goddard
5data analysisSparky3.114Goddard
6peak pickingATNOS/CANDID2.1Herrmann, Guntert and Wuthrich
7structure calculationCYANA3.0Guntert, Mumenthaler and Wuthrich
8protein backbone torsion angle prediction from nmr chemical shiftsTALOS+Cornilescu, Delaglio and Bax
9validationProcheckNMRLaskowski and MacArthur
10refinementAmber12Case, D.A. et al.