☰ Navigation Tabs
Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 80-120 uM [U-2H] ISS (53-MER) 100% D2O 10 6.5 ambient 298 2 2D 1H-1H TOCSY 80-120 uM [U-2H] ISS (53-MER) 100% D2O 10 6.5 ambient 298 3 2D 1H-13C HMQC 80-120 uM [U-100% 13C] ISS (53-MER) 100% D2O 10 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 800 3 Bruker AVANCE 500
NMR Refinement Method Details Software molecular dynamics NMRDraw
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 256 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 4 collection TopSpin Bruker Biospin 5 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman