NMR Assignments and structure of Translation initiation factor IF-1 from Burkholderia thailandensis E264.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 2 | 2D 1H-13C HSQC | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 3 | 3D CBCA(CO)NH | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 4 | 3D HNCO | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 5 | 3D HNCACB | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 6 | 3D HBHA(CO)NH | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 7 | 3D HCCH-TOCSY | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 8 | 3D 1H-15N NOESY | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| 9 | 3D 1H-13C NOESY | 1.2 mM [U-95% 13C; U-95% 15N] Translation initiation factor IF | 95% H2O/5% D2O | 6.0 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | processing | TopSpin | Bruker Biospin | |
| 3 | chemical shift assignment | CCPNMR | CCPN | |
| 4 | data analysis | CCPNMR | CCPN | |
| 5 | peak picking | CCPNMR | CCPN | |
| 6 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
| 7 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
| 8 | geometry optimization | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 9 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 10 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |














