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Solution structure of LEDGF/p75 IBD in complex with POGZ peptide (1389-1404)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 2 3D HNCACB 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 3 3D CBCA(CO)NH 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 4 3D HCCH-TOCSY 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 5 3D HNCO 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 6 3D 1H-15N NOESY 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298 7 3D 1H-13C NOESY 0.5 mM peptide, 0.5 mM [U-13C; U-15N] protein 95% H2O/5% D2O 125 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics, molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 29 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 data analysis Sparky Goddard 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement YASARA YASARA 5 refinement CYANA Guntert, Mumenthaler and Wuthrich