2N2N

Tom1 negatively modulates binding of Tollip to phosphatidylinositol 3-phosphate via a coupled folding and binding mechanism


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
23D CBCA(CO)NH0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
33D HNCO0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
43D HCACO0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
53D HNCACB0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
83D 1H-15N NOESY0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
93D 1H-15N TOCSY0.8-1.0 mM [U-99% 13C; U-99% 15N] Tom1 GAT, 1.0-1.2 mM Tollip TBD, 50 uM DSS, 50 mM potassium chloride, 20 mM [U-2H] TRIS, 1 mM sodium azide, 1 mM [U-2H] DTT90% H2O/10% D2O707.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2VarianAgilent DD2900
NMR Refinement
MethodDetailsSoftware
DISTANCE GEOMETRY, SIMULATED ANNEALINGDGSA-DISTANCE GEOMETRY SIMULATED ANNEALINGRosetta
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number7500
Conformers Submitted Total Number20
Representative Model1 (score result from rosetta)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionRosettaShen, Vernon, Baker and Bax
2processingRosettaShen, Vernon, Baker and Bax
3validationRosettaShen, Vernon, Baker and Bax
4data analysisRosettaShen, Vernon, Baker and Bax
5collectionRosettaShen, Vernon, Baker and Bax
6structure solutionNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8validationNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
10collectionNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
11structure solutionPSVSBhattacharya and Montelione
12processingPSVSBhattacharya and Montelione
13validationPSVSBhattacharya and Montelione
14data analysisPSVSBhattacharya and Montelione
15collectionPSVSBhattacharya and Montelione
16structure solutionSparkyGoddard
17processingSparkyGoddard
18validationSparkyGoddard
19data analysisSparkyGoddard
20collectionSparkyGoddard
21structure solutionTALOSCornilescu, Delaglio and Bax
22processingTALOSCornilescu, Delaglio and Bax
23validationTALOSCornilescu, Delaglio and Bax
24data analysisTALOSCornilescu, Delaglio and Bax
25collectionTALOSCornilescu, Delaglio and Bax
26structure solutionTopSpinBruker Biospin
27processingTopSpinBruker Biospin
28validationTopSpinBruker Biospin
29data analysisTopSpinBruker Biospin
30collectionTopSpinBruker Biospin
31refinementRosettaShen, Vernon, Baker and Bax