2N26
Solution structure of Miz-1 zinc fingers 3 and 4
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | cbcaconh (H[N[co[{CA|ca[C]}]]]) | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
2 | 3D HNCO | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
3 | hnha (H{[N]+[HA]}) | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
5 | 2D 1H-15N HSQC/HMQC | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
6 | 3D HNCACB | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
7 | ccconh (HNCO) | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
8 | 3D 1H-13C NOESY | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
10 | 2D 1H-13C HSQC/HMQC | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 0.7 - 1.0 mM [U-13C; U-15N] Miz1 | 90% H2O/10% D2O | 0.05 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UnityInova | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | Lowest energy and restraint violations |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | ARIA | 2.2 | Nilges, Rieping, Habeck, Bardiaux, Bernard and Malliavin |
2 | refinement | ARIA | 2.2 | Nilges, Rieping, Habeck, Bardiaux, Bernard and Malliavin |
3 | structure calculation | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
4 | refinement | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
5 | chemical shift assigment, data analysis | CcpNmr Analysis | 2.1 | CCPN |
6 | data analysis | DANGLE | 1.1 | CCPN |
7 | processing | NMRPipe | 7.4 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |