2N1P
Structure of the C-terminal membrane domain of HCV NS5B protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 | |||
2 | 2D 1H-1H NOESY | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 | |||
3 | 2D 1H-15N HSQC | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 | |||
4 | 2D 1H-13C HSQC | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 | |||
5 | 2D 1H-1H TOCSY | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 | |||
6 | 2D 1H-1H NOESY | 1.4 mM protein, 1 M [U-2H] SDS | 95% H2O/5% D2O | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 500 |
2 | Bruker | Avance | 1000 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | TOPSPIN |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 41 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TOPSPIN | Bruker Biospin | |
2 | chemical shift assignment | SPARKY | Goddard | |
3 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
4 | structure solution | X-PLOR_NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
5 | refinement | X-PLOR_NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |