2N1I | pdb_00002n1i

Structure of the PR domain from PRDM16


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4-0.5 mM [U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
22D 1H-13C HSQC aliphatic0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
32D 1H-13C HSQC aromatic0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
43D HNCACB0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
53D CBCA(CO)NH0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
63D C(CO)NH0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
73D HNCO0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
83D HN(CA)CO0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
93D H(CCO)NH0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
103D HCCH-TOCSY0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
113D CCH-TOCSY0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
123D 1H-13C NOESY aliphatic0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
133D 1H-13C NOESY aromatic0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
142D HBCB(CGCD)HD0.45-0.55 mM [U-99% 13C; U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
153D 1H-15N NOESY0.4-0.5 mM [U-99% 15N] PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
162D DQF-COSY0.5 mM PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
172D 1H-1H TOCSY0.5 mM PRDM16, 20 mM potassium phosphate, 50 mM potassium chloride, 2.5 mM DTT90% H2O/10% D2O0.0886.8ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVarian NMR System800
2VarianVarian NMR System900
3VarianVarian NMR System500
NMR Refinement
MethodDetailsSoftware
molecular dynamicsCartesian dynamics and Powell minimization in explicit water (default Aria refinement protocol)VnmrJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJAgilent
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4data analysisCcpNmrCCPN
5chemical shift assignmentCcpNmrCCPN
6peak pickingCcpNmrCCPN
7structure solutionARIALinge, O'Donoghue and Nilges
8refinementARIALinge, O'Donoghue and Nilges
9structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
10refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
11generation of torsion angle restraintsTALOSCornilescu, Delaglio and Bax