2MZZ | pdb_00002mzz

NMR structure of APOBEC3G NTD variant, sNTD

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N TROSY	0.15-0.20 mM [U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
2	3D HNCA-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
3	3D HN(CO)CA-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
4	3D HNCO-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
5	3D HN(CA)CO-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
6	3D HNCACB-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
7	3D HN(CO)CACB-TROSY	0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
8	3D 15N-edited NOESY	0.05-0.10 mM [U-100% 13C; U-100% 15N; U-60% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
9	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Arg] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
10	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
11	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
12	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Lys] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
13	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Phe] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
14	2D 1H-15N TROSY	0.05-0.10 mM [U-80% 2H; 100% 15N-Tyr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298
15	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ala] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
16	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Arg] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
17	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
18	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
19	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Lys] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
20	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Met] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
21	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Phe] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
22	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Thr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
23	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Tyr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
24	2D 1H-13C HSQC	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
25	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ala] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
26	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Arg] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
27	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
28	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
29	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Lys] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
30	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Met] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
31	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Phe] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
32	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Thr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
33	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Tyr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
34	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
35	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
36	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
37	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
38	2D 1H-1H NOESY	0.05-0.10 mM [U-80% 2H; 100% 1H-Trp,Ile,Leu,Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
39	2D 1H-1H NOESY	0.15-0.20 mM sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	100% D2O		7.3	ambient	298
40	3D 1H-13C NOESY	0.05-0.10 mM [U-100% 13C; U-100% 15N; U-60% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate	95% H2O/5% D2O		7.3	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Bruker	AVANCE	850
3	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
simulated annealing		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	Sparky		Goddard
4	estimation of dihedral angles	TALOS		Cornilescu, Delaglio and Bax
5	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
6	drawing structures	MOLMOL		Koradi, Billeter and Wuthrich
7	drawing structures	MacPyMol		Schrodinger
8	evaluation of structure quality	ProcheckNMR		Laskowski and MacArthur
9	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore