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Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 2 3D HNCACB 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 3 3D CBCA(CO)NH 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 4 3D HNCO 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 5 3D HCCH-TOCSY 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 6 3D H(CCO)NH 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 7 3D C(CO)NH 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 8 3D 1H-15N NOESY 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 9 3D 1H-13C NOESY 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298 10 3D HNHA 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide 95% H2O/5% D2O 0.16 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 850 2 Bruker AVANCE 700
NMR Refinement Method Details Software torsion angle dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.37 Schwieters, C. et al. 2 processing NMRPipe 7.5 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 peak picking Sparky 3.113 Goddard 4 chemical shift assignment Sparky 3.113 Goddard 5 geometry optimization TALOS 3.80F1 Cornilescu, Delaglio and Bax 6 collection TopSpin 3.1 Bruker Biospin 7 refinement X-PLOR NIH 2.37 Schwieters, C. et al.