2MYQ
NMR structure of an Odin-Sam1 fragment
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 600 uM protein, TFE/H2O 70/30 v/v | trifluoroethanol/water | ambient | 298 | |||
2 | 2D 1H-1H NOESY | 600 uM protein, TFE/H2O 70/30 v/v | trifluoroethanol/water | ambient | 298 | |||
3 | 2D DQF-COSY | 600 uM protein, TFE/H2O 70/30 v/v | trifluoroethanol/water | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | Structures were calculated with cyana without further refinement | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | collection | VnmrJ | Varian | |
3 | processing | VnmrJ | Varian | |
4 | chemical shift assignment | XEASY | Bartels et al. | |
5 | peak picking | XEASY | Bartels et al. | |
6 | data analysis | XEASY | Bartels et al. | |
7 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |