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NMR Structure of unfolding intermediate state of RRM-3 domain of ETR-3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 2 2D 1H-13C HSQC aliphatic 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 3 2D 1H-13C HSQC aromatic 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 4 3D HNCA 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 5 3D HNCACB 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 6 3D 1H-15N NOESY 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 7 3D 1H-13C NOESY aliphatic 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 8 3D 1H-13C NOESY aromatic 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303 9 3D HNCO 1 mM [U-99% 13C; U-99% 15N] RRM3 intermediate state, 50 mM sodium chloride, 20 mM sodium phosphate, 6 M urea 95% H2O/5% D2O 0.02 6.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 700
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing, molecular dynamics WATER REFINEMENT TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment CARA Keller and Wuthrich 4 data analysis CARA Keller and Wuthrich 5 peak picking CARA Keller and Wuthrich 6 chemical shift calculation CYANA Guntert, Mumenthaler and Wuthrich 7 structure solution CYANA Guntert, Mumenthaler and Wuthrich 8 refinement CYANA Guntert, Mumenthaler and Wuthrich