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NMR Structure of the mature form of Trypanosoma brucei 1CGrx1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1.5 mM [U-13C; U-15N] protein, 150 mM sodium chloride, 10 mM DTT, 0.05 % sodium azide, 0.2 mM PMSF, 1 mM EDTA 93% H2O/7% D2O 7.0 ambient 298 2 3D 1H-13C NOESY aliphatic 1.5 mM [U-13C; U-15N] protein, 150 mM sodium chloride, 10 mM DTT, 0.05 % sodium azide, 0.2 mM PMSF, 1 mM EDTA 93% H2O/7% D2O 7.0 ambient 298 3 2D 1H-13C HSQC aromatic 1.5 mM [U-13C; U-15N] protein, 150 mM sodium chloride, 10 mM DTT, 0.05 % sodium azide, 0.2 mM PMSF, 1 mM EDTA 93% H2O/7% D2O 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 1000 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 chemical shift assignment CARA Keller and Wuthrich 4 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 5 structure solution UNIO'10 2.02 (UNIO)Torsten Herrmann 6 processing TopSpin Bruker Biospin