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Solution structure of SATB1 homeodomain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.3 mM [U-15N] SATB1 homeodomain-1, 50 mM sodium phosphate-2, 50 mM sodium chloride-3, 0.5 mM DSS-4 95% H2O/5% D2O 0.1 5.5 ambient 298 2 2D 1H-15N HSQC 0.7-1.2 mM [U-15N] SATB1 homeodomain-5, 50 mM sodium phosphate-6, 200 mM sodium chloride-7, 0.5 mM DSS-8 95% H2O/5% D2O 0.25 5.5 ambient 298 3 3D 1H-15N NOESY 0.7-1.2 mM [U-15N] SATB1 homeodomain-5, 50 mM sodium phosphate-6, 200 mM sodium chloride-7, 0.5 mM DSS-8 95% H2O/5% D2O 0.25 5.5 ambient 298 4 3D 1H-15N TOCSY 0.7-1.2 mM [U-15N] SATB1 homeodomain-5, 50 mM sodium phosphate-6, 200 mM sodium chloride-7, 0.5 mM DSS-8 95% H2O/5% D2O 0.25 5.5 ambient 298 5 2D 1H-1H NOESY 0.7-1.2 mM SATB1 homeodomain-9, 50 mM sodium phosphate-10, 200 mM sodium chloride-11, 0.5 mM DSS-12 95% H2O/5% D2O 0.25 5.5 ambient 298 6 2D DQF-COSY 0.7-1.2 mM SATB1 homeodomain-9, 50 mM sodium phosphate-10, 200 mM sodium chloride-11, 0.5 mM DSS-12 95% H2O/5% D2O 0.25 5.5 ambient 298 7 2D 1H-1H TOCSY 0.7-1.2 mM SATB1 homeodomain-9, 50 mM sodium phosphate-10, 200 mM sodium chloride-11, 0.5 mM DSS-12 95% H2O/5% D2O 0.25 5.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker DMX 750 3 Bruker DMX 500
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 data analysis Felix Accelrys Software Inc. 3 refinement CNS