SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.015-0.030 mM protein_1, 0.10 mM [U-100% 15N] protein_2, 20 mM HEPES, 150 mM sodium chloride, 0.01 w/v sodium azide90% H2O/10% D2O0.167.0ambient295
22D 1H-15N HSQC0.015-0.030 mM protein_1, 0.10 mM [U-100% 15N] protein_2, 20 mM HEPES, 150 mM sodium chloride, 0.01 w/v sodium azide90% H2O/10% D2O0.167.0ambient295
32D 1H-15N HSQC0.9 mM [U-100% 15N] protein_1, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
43D 1H-15N NOESY0.9 mM [U-100% 15N] protein_1, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
53D 1H-15N TOCSY0.9 mM [U-100% 15N] protein_1, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
62D 1H-15N HSQC0.9 mM [U-100% 15N] protein_2, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
73D 1H-15N NOESY0.9 mM [U-100% 15N] protein_2, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
83D 1H-15N TOCSY0.9 mM [U-100% 15N] protein_2, 150 mM sodium chloride, 0.01 w/v sodium azide, 20 mM sodium phosphate90% H2O/10% D2O0.207.0ambient295
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
Rigid-body/torsion angle simulated annealing, Cartesian Molecular dynamicsHADDOCK modelling consists of (i) rigid-body docking, (ii) semi-flexible refinement stage and (iii) final refinement in explicit solvent., Final gentle water simulated annealing refinement protocol using molecular dynamics in Cartesian space.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number400
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Zhengrong and Bax
2peak pickingNMRViewJohnson, One Moon Scientific
3chemical shift assignmentCARAKeller and Wuthrich
4calculation engineCNS2.0Brunger, Adams, Clore, Gros, Nilges and Read
5data-driven docking using cns as structure calculation engineHADDOCK2.1Alexandre Bonvin
6nmr spectra acquisitionTopSpinBruker Biospin
7refinementHADDOCK2.1Alexandre Bonvin
8refinementCNS2.0Brunger, Adams, Clore, Gros, Nilges and Read