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NMR structure of the protein NP_809137.1 from Bacteroides thetaiotaomicron
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 2 3D 1H-13C NOESY aliphatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 3 3D 1H-13C NOESY aromatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 4 3D 1H-15N NOESY 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 5 APSY 4D-HACANH 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 6 APSY 5D-CBCACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298 7 APSY 5D-HACACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT 95% H2O/5% D2O 0.220 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA Herrmann, Guntert and Wuthrich 2 refinement OPAL Luginbuhl, Guntert, Billeter and Wuthrich 3 collection TopSpin Bruker Biospin 4 processing TopSpin Bruker Biospin 5 chemical shift assignment CARA Keller and Wuthrich 6 chemical shift assignment UNIO Herrmann and Wuthrich 7 structure solution UNIO Herrmann and Wuthrich 8 processing MddNMR Maxim Mayzel, Vladislav Orekhov 9 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax