2MT7
Solution structure of spider-venom peptide Hs1a
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
2 | 3D HNCO | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
4 | 3D HNCACB | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
5 | 3D 1H-15N NOESY | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
6 | 3D 1H-13C NOESY aliphatic | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
7 | 3D 1H-13C NOESY aromatic | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 | |
8 | 4D HCC(CO)NH TOCSY | 0.5 mM [U-98% 13C; U-98% 15N] Hs1a-1, 20 mM sodium acetate-2, 5 % D2O-3 | 95% H2O/5% D2O | 20 | 4.9 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | Using automated NOE assignments | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | MolProbity score |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (molprobity score) |
Additional NMR Experimental Information | |
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Details | All 3D/4D data other than NOESY data acquired with NUS and processed using maximum entropy reconstruction |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.1 | Bruker Biospin |
2 | processing | Rowland_NMR_Toolkit | 3 | Jeffrey C. Hoch & Alan Stern |
3 | peak picking | XEASY | Bartels et al. | |
4 | data analysis | XEASY | Bartels et al. | |
5 | data analysis | TALOS+ | Cornilescu, Delaglio and Bax | |
6 | geometry optimization | CYANA | 3 | Guntert, Mumenthaler and Wuthrich |
7 | structure solution | CYANA | 3 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | CYANA | 3 | Guntert, Mumenthaler and Wuthrich |