2MQC
NMR structure of the protein BVU_0925 from Bacteroides vulgatus ATCC 8482
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | APSY 4D-HACANH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
2 | APSY 5D-HACACONH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
3 | APSY 5D-CBCACONH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
4 | 2D 1H-15N HSQC | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
5 | 3D 1H-15N NOESY | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
6 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
7 | 3D 1H-13C NOESY aromatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | Guntert P. | |
2 | geometry optimization | CYANA | Guntert P. | |
3 | refinement | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
4 | geometry optimization | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
5 | collection | TopSpin | 3.1 | Bruker Biospin |
6 | processing | TopSpin | 3.1 | Bruker Biospin |
7 | data analysis | CARA | Keller and Wuthrich | |
8 | chemical shift assignment | CARA | Keller and Wuthrich | |
9 | peak picking | j-UNIO | Herrmann, Guntert and Wuthrich | |
10 | chemical shift assignment | j-UNIO | Herrmann, Guntert and Wuthrich | |
11 | structure solution | j-UNIO | Herrmann, Guntert and Wuthrich |