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Backbone Structure of Actin Depolymerizing Factor (ADF) of Toxoplasma gondii Based on Prot3DNMR Approach
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 2 3D CBCA(CO)NH 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 3 3D C(CO)NH 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 4 3D HNCO 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 5 3D HNCA 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 6 (4,3)D-HNCN 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298 7 CNH-NOESY 10 % [U-99% 2H] D2O-1, 90 % H2O-2, 0.02 % sodium azide-3, 50 mM sodium phosphate-4, 150 mM sodium chloride-5, 1 mM EDTA-6 90% H2O/10% D2O 0.2 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was determined using a combination of Dihedral angles and NOEs
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 refinement CYANA Guntert, Mumenthaler and Wuthrich