3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 2 | 3D HN(CO)CA | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 3 | 3D HNCA | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 4 | 3D HNCACB | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 5 | 3D HCCH-TOCSY | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 6 | 3D 1H-15N NOESY | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 7 | 3D 1H-15N TOCSY | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| 8 | 3D 1H-13C NOESY | 2 mM [U-100% 13C; U-100% 15N] YgaP | 90% H2O/10% D2O | 0 | 7.0 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 10 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | CYANA | Herrmann, Guntert and Wuthrich | |
| 2 | structure solution | CYANA | Herrmann, Guntert and Wuthrich | |
| 3 | refinement | CYANA | Herrmann, Guntert and Wuthrich | |
