Solution NMR structure of the reovirus p15 fusion-associated small transmembrane (FAST) protein fusion-inducing lipid packing sensor (FLiPS) motif in dodecyl phosphocholine (DPC) micelles
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
| 2 | 2D 1H-1H TOCSY | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
| 3 | 2D 1H-15N HSQC | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
| 4 | 2D 1H-13C HSQC | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 50 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
| 2 | processing | TopSpin | 3.1 | Bruker Biospin |
| 3 | chemical shift assignment | Sparky | 3.110 | Goddard |
| 4 | validation | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
| 5 | structure viewing | UCSF Chimera | 1.8 | NIH |
| 6 | ensemble viewing | MOLMOL | 2K.2 | Koradi, Billeter and Wuthrich |














