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Recognition complex of DNA d(CGACTAGTCG)2 with thiazotropsin analogue AIK-18/51
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 2 mM AIK-18/51, 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 2 2D 1H-1H NOESY 2 mM AIK-18/51, 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 3 2D 1H-1H COSY 2 mM AIK-18/51, 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1 Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment Sparky Goddard 4 data analysis Sparky Goddard 5 peak picking Sparky Goddard 6 geometry optimization SYBYL Tripos 7 structure solution SYBYL Tripos 8 data analysis SYBYL Tripos 9 structure generation SYBYL Tripos 10 data analysis MARDIGRAS Tripos 11 structure solution MARDIGRAS Tripos 12 noe conversion to distances MARDIGRAS Tripos 13 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 14 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 15 geometry optimization Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman