2MK4
Solution structure of ORF2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
2 | 3D CBCA(CO)NH | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
3 | 3D HNCACB | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
4 | 3D HNCO | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
5 | 3D C(CO)NH | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
6 | 3D HBHA(CO)NH | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
7 | 3D H(CCO)NH | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
8 | 3D HCCH-TOCSY | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
9 | 3D 1H-13C NOESY | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 | ||
10 | 3D 1H-15N NOESY | 0.9 mM [U-99% 13C; U-99% 15N] ORF2-1, 18 mM MOPS-2 | 90% H2O/10% D2O | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | VnmrJ |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VnmrJ | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | data analysis | Sparky | Goddard | |
5 | peak picking | Sparky | Goddard | |
6 | peak picking | CYANA | Guntert, Mumenthaler and Wuthrich | |
7 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
8 | geometry optimization | CYANA | Guntert, Mumenthaler and Wuthrich | |
9 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |