2MK0 | pdb_00002mk0

Structure of the PSCD4-domain of the cell wall protein pleuralin-1 from the diatom Cylindrotheca fusiformis

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	HNCA	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
2	CBCA(CO)NH	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
3	1H-15N-HSQC	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298
4	1H-15N-NOESY HSQC	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298
5	1H-15N-TOCSY HSQC	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298
6	HNCO	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
7	HACACO	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
8	HCCH-TOCSY	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
9	2D 1H-1H TOCSY	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298
10	2D 1H-1H NOESY	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298
11	3D HBHA(CO)NH	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
12	2D 1H-13C HSQC	0.8 mM [U-97% 13C; U-98% 15N] pleuralin-1, formerly HEP200-2	95% H2O/5% D2O		6.5		298
13	2D 1H-15N HSQC	0.8 mM [U-97% 15N] pleuralin-1, formerly HEP200-1	95% H2O/5% D2O		6.5		298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	600
2	Bruker	DRX	800

NMR Refinement
Method	Details	Software
simulated annealing	Structures were refined by using data imputation (. Cano, C., Brunner, Baskaran, K., K. Elsner, R., Munte, C. E. and Kalbitzer, H. R. (2009) Protein structure calculation with data imputation: the use of substitute restraints. J. Biomol. NMR 45, 397-411) and refinement in explicut water (Linge, J.P., Williams, M.A., Spronk, C.A.E.M., Bonvin, A.M.J.J. and Nilges, M. (2003). Refinement of protein structures in explicit solvent. Proteins 50, 496-506).	AUREMOL

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	2000
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	The structure has been determined combining experimental restraints (J-couplings, Noe distances, Hydrogen Bonds and RDCs) with dihedral angles obtained with TALOS and with additional substitute restraints (Noes, Hydrogen bonds and dihedral angles)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	peak picking	AUREMOL	2.4.1 beta	Bruker Biospin
2	data analysis	AUREMOL	2.4.1 beta	Bruker Biospin
3	processing	AUREMOL	2.4.1 beta	Bruker Biospin
4	structure solution	CNS	1.21	Brunger, Adams, Clore, Gros, Nilges and Read
5	collection	TopSpin	3.1	Bruker Biospin
6	processing	TopSpin	3.1	Bruker Biospin
7	data analysis	TopSpin	3.1	Bruker Biospin
8	refinement	CNS

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.