2MJJ

A tetrahelical DNA fold adopted by alternating GGG and GCG tracts


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA90% H2O/10% D2O1006ambient273
22D DQF-COSY2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA90% H2O/10% D2O1006ambient273
32D 1H-1H TOCSY2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA90% H2O/10% D2O1006ambient273
42D 1H-31P COSY2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA90% H2O/10% D2O1006ambient273
52D 1H-15N HSQC2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA90% H2O/10% D2O1006ambient273
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentVNMRS800
2AgilentVNMRS600
3AgilentDD2600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionAmber11Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
2refinementAmberCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman