2MH2

Structural insights into the DNA recognition and protein interaction domains reveal fundamental homologous DNA pairing properties of HOP2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
22D 1H-13C HSQC6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
33D CBCA(CO)NH6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
43D C(CO)NH6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
53D HNCO6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
63D HNCA6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
73D HNCACB6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
83D H(CCO)NH6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
93D HCCH-TOCSY6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
103D 1H-15N NOESY6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
113D 1H-15N TOCSY6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
123D HCACO6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
133D HN(CO)CA6 mg/mL [U-99% 13C; U-99% 15N] Hop2, 5% [U-99% 2H] D2O, 10 mM imidazole, 120 mM sodium chloride, 5% glycerol95% H2O/5% D2O1207.8ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
distance geometryNMRPipe
NMR Ensemble Information
Conformer Selection Criteriaback calculated data agree with experimental NOESY spectrum
Conformers Calculated Total Number40000
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingSPARKYGoddard
3chemical shift assignmentSPARKYGoddard
4chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
5data analysisTALOSCornilescu, Delaglio and Bax
6structure solutionCS-RosettaShen, Vernon, Baker and Bax
7refinementRPFHuang, Powers, Montelione
8structure validationProcheckLaskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton