2MGY | pdb_00002mgy

Solution structure of the mitochondrial translocator protein (TSPO) in complex with its high-affinity ligand PK11195


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
22D 1H-13C HSQC aliphatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
32D 1H-13C HSQC aromatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
43D CBCA(CO)NH0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
53D HNCO0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
63D HNCA0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
73D HNCACB0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
83D HN(CO)CA0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
93D HCCH-TOCSY0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
103D 1H-15N NOESY0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
113D 1H-13C NOESY aliphatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
123D 1H-13C NOESY aromatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
133D 1H-13C NOESY0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
143D CBCA(CO)NH0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
153D HNCO0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
163D HNCA0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
173D HNCACB0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
183D HN(CO)CA0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
193D CBCA(CO)NH0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
203D HNCO0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
213D HNCA0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
223D HNCACB0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
233D HN(CO)CA0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
242D 1H-13C HSQC aliphatic0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
253D 1H-13C NOESY aliphatic0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
263D CBCA(CO)NH0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
273D HNCO0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
283D HNCA0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
293D HNCACB0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
303D HN(CO)CA0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
313D CBCA(CO)NH0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
323D HNCO0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
333D HNCA0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
343D HNCACB0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
353D HN(CO)CA0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
363D 1H-13C NOESY aliphatic0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
373D 1H-13C NOESY aromatic0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
382D 1H-13C HSQC aliphatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
392D 1H-13C HSQC aromatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
403D 1H-13C NOESY aliphatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
413D 1H-13C NOESY aromatic0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
423D HCCH-TOCSY0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
432D 1H-15N HSQC0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
442D 1H-15N HSQC0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
452D 1H-15N HSQC0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
462D 1H-15N HSQC0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
472D 1H-15N HSQC0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles93% H2O/7% D2O106.0ambient315
482D 1H-15N HSQC0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles100% D2O106.0ambient315
493D 1H-15N NOESY0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
502D 1H-13C HSQC aliphatic0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
512D 1H-13C HSQC aromatic0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles90% H2O/10% D2O106.0ambient315
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number105
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1peak pickingCYANA3.0Guntert, Mumenthaler and Wuthrich
2chemical shift assignmentSparkyGoddard
3refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
4structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
5processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6chemical shift assignmentCARAKeller and Wuthrich