2MFZ

NMR structure of C-terminal domain from A. ventricosus minor ampullate spidroin (MiSp)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
23D HNCA1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
33D CBCA(CO)NH1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
43D HNCO1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
53D HN(CA)CO1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
63D 1H-15N NOESY1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
73D 1H-13C NOESY aliphatic1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
83D 1H-13C NOESY aromatic1 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-1, 20 mM sodium phosphate-2, 20 mM sodium chloride-3, 0.03 % sodium azide-4, 8 % [U-100% 2H] D2O-5, 92% H2O/8% D2O0.06886.8ambient atm298
93D 13C,15N filtered 1H-13C NOESY aliphatic0.25 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-6, 0.25 mM Minor ampullate spidroin CT-7, 20 mM sodium phosphate-8, 20 mM sodium chloride-9, 0.03 % sodium azide-10, 8 % [U-100% 2H] D2O-11, 92% H2O/8% D2O0.06886.8ambient atm298
102D 1H-15N HSQC0.25 mM [U-99% 13C; U-99% 15N] Minor ampullate spidroin CT-6, 0.25 mM Minor ampullate spidroin CT-7, 20 mM sodium phosphate-8, 20 mM sodium chloride-9, 0.03 % sodium azide-10, 8 % [U-100% 2H] D2O-11, 92% H2O/8% D2O0.06886.8ambient atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsUsed for structure refinement, Used for structure calculationCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
2refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
3chemical shift assignmentCARAKeller and Wuthrich
4data analysisCARAKeller and Wuthrich
5peak pickingUNIOT. Herrmann, F. Fiorito, J. Volk
6collectionVNMRJVarian
7processingTOPSPINBruker Biospin
8refinementCYANA