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Solution structure of the circular g-domain analog from the wheat metallothionein Ec-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 307.2 2 2D 1H-1H NOESY 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 307.2 3 2D 1H-113Cd HSQC 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 307.2 4 2D 1H-1H TOCSY 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 295.5 5 2D 1H-1H NOESY 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 295.5 6 2D 1H-113Cd HSQC 0.9 mM cyc-gEc1, 1.8 mM 113Cd CADMIUM ION, 10 mM [U-99% 2H] TRIS, 10 mM sodium perchlorate 90% H2O/10% D2O 0.02 7.5 ambient 295.5
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 600 3 Bruker DRX 500
NMR Refinement Method Details Software molecular dynamics, simulated annealing RESTRAINT REFINEMENT IN EXPLICIT SOLVENT (WATER), IN TORSION COORDINATES USING NOEASSIGN ALGORITHM CARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA 1.9.0 Keller and Wuthrich 2 peak picking CARA 1.9.0 Keller and Wuthrich 3 data analysis CARA 1.9.0 Keller and Wuthrich 4 structure solution CYANA 3.1 Guntert, Mumenthaler and Wuthrich 5 chemical shift assignment Sparky 3.113 Goddard 6 peak picking Sparky 3.113 Goddard 7 data analysis Sparky 3.113 Goddard 8 data analysis XEASY 1.3.13 Bartels et al. 9 peak picking XEASY 1.3.13 Bartels et al. 10 structure solution X-PLOR NIH 2.33 Schwieters, Kuszewski, Tjandra and Clore 11 refinement X-PLOR NIH 2.33 Schwieters, Kuszewski, Tjandra and Clore 12 processing TopSpin 3.0 Bruker Biospin 13 collection TopSpin 3.0 Bruker Biospin 14 validation PSVS Bhattacharya and Montelione