2MA9 | pdb_00002ma9

HIV-1 Vif SOCS-box and Elongin BC solution structure

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
2	2D 1H-13C HSQC	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
3	3D 1H-13C NOESY	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
4	3D 1H-15N NOESY	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
5	3D HCCH-TOCSY	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
6	3D HNCO	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
7	3D CBCA(CO)NH	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
8	3D HNCACB	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
9	3D HNCA	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
10	3D HNCACO	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
11	3D HNHA	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
12	3D HCCH-COSY	0.2 mM [U-99% 13C; U-99% 15N] Vif SOCS, 0.2 mM Elongin B, 0.2 mM Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
13	2D 1H-15N HSQC	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
14	3D HNCO	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
15	3D CBCA(CO)NH	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
16	3D HNCA	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
17	3D HNCACB	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
18	3D HNCACO	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
19	3D HNHA	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
20	3D 1H-13C NOESY	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
21	3D 1H-15N NOESY	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298
22	3D HCCH-TOCSY	0.2 mM Vif SOCS, 0.2 mM [U-99% 13C; U-99% 15N] Elongin B, 0.2 mM [U-99% 13C; U-99% 15N] Elongin C	90% H2O/10% D2O	50	7.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Varian	INOVA	800

NMR Refinement
Method	Details	Software
simulated annealing	THE STARTING STRUCTURE OF HADDOCK DOCKING IS PDB ENTRY 3DCG.	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe	5.5	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	collection	TopSpin	3.0	Bruker Biospin
3	chemical shift assignment	CCPN	2.2	CCPN
4	chemical shift calculation	CCPN	2.2	CCPN
5	peak picking	CCPN	2.2	CCPN
6	structure solution	CS-ROSETTA		Shen, Vernon, Baker and Bax
7	refinement	CS-ROSETTA		Shen, Vernon, Baker and Bax
8	structure solution	HADDOCK		Alexandre Bonvin
9	refinement	HADDOCK		Alexandre Bonvin