2M9V | pdb_00002m9v

Structure of Saccharomyces cerevisiae Est3 protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
23D HNCA TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
33D HN(CA)CB TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
43D HN(CO)CA TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
53D HN(COCA)CB TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
63D HNCO TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
73D 1H-15N NOESY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O, 0.15 mM TSP93% H2O/7% D2O7.1ambient298
82D 1H-13C HMQC50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O93% H2O/7% D2O7.1ambient298
93D HMCMCBCA50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O93% H2O/7% D2O7.1ambient298
103D HMCMCGCBCA50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O93% H2O/7% D2O7.1ambient298
113D methyl 1H-1H 13C HMQC NOESY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 7 % D2O93% H2O/7% D2O7.1ambient298
122D 1H-15N HSQC50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 10 % D2O, 9.6 mg/mL Pf1 phage90% H2O/10% D2O7.1ambient298
132D 1H-15N HSQC TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 10 % D2O, 9.6 mg/mL Pf1 phage90% H2O/10% D2O7.1ambient298
142D 1H-15N HSQC50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 10 % D2O90% H2O/10% D2O7.1ambient298
152D 1H-15N HSQC TROSY50 mM Bis tris propane, 150 mM MOPS, 50 mM sodium sulfate, 100 mM arginine, 100 mM glutamate, 100 mM NDSB, 2 mM DTT, 10 % D2O90% H2O/10% D2O7.1ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVNMRS800
2AgilentDD2900
NMR Refinement
MethodDetailsSoftware
Molecular fragment replacementVnmrJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was calculated by a combination of NOE and Residual dipolar coupling
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJ3.1Varian
2data analysisCcpNmr Analysis2.1.5CCPN
3peak pickingCcpNmr Analysis2.1.5CCPN
4chemical shift assignmentCcpNmr Analysis2.1.5CCPN
5processingNMRPipe2011Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6constraints list generation for structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
7structure solutionRosetta3.4David Baker
8structure solutionCS-Rosetta_toolbox1.3David Baker
9structure and constraints validationX-PLOR NIH2.29Schwieters, Kuszewski, Tjandra and Clore
10refinementRosetta3.4David Baker