2M65
NMR structure of human restriction factor APOBEC3A
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 2 | 3D HNCA | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 3 | 3D HN(CO)CA | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 4 | 3D HNCACB | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 5 | 3D HN(COCA)CB | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 6 | 3D HCCH-TOCSY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 7 | 3D simulaneous 1H-13C and 1H-15N NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 8 | 2D 1H-15N HSQC | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 9 | 3D HNCA | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 10 | 3D HN(CO)CA | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 11 | 3D HCCH-TOCSY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 12 | 3D simultaneous 1H-13C and 1H-15N NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 13 | 2D 1H-15N HSQC | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 14 | 3D HCCH-TOCSY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 15 | 3D simulaneous 1H-13C and 1H-15N NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 16 | 2D 1H-15N HSQC | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 17 | 3D HNCACB | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 18 | 3D HN(COCA)CB | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 19 | 3D simultaneous 1H-13C and 1H-15N NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 20 | 2D 1H-13C HSQC aliphatic | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 21 | 2D 1H-15N HSQC | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 22 | 3D simultaneous 1H-13C and 1H-15N NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 23 | 2D 1H-13C HSQC aliphatic | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 24 | 2D 1H-1H NOESY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| 25 | 2D 1H-1H TOCSY | 13C,15N-APOBEC3A | 93% H2O/7% D2O | 6.5 | ambient | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| 2 | Bruker | AVANCE | 800 |
| 3 | Bruker | AVANCE | 700 |
| 4 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 512 |
| Conformers Submitted Total Number | 30 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR NIH | Schwieters, C.D. et al. | |
