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NMR solution structure of a MYB-like DNA binding domain of KNL-2 from C. Elegans
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY aliphatic 0.2 mM [U-99% 13C; U-99% 15N] KNL2, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.02 % sodium azide, 5 mM Magnesium Sulphate 90% H2O/10% D2O 6.5 ambient 298 2 3D 1H-15N NOESY 0.2 mM [U-99% 13C; U-99% 15N] KNL2, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.02 % sodium azide, 5 mM Magnesium Sulphate 90% H2O/10% D2O 6.5 ambient 298 3 3D 1H-13C NOESY aromatic 0.2 mM [U-99% 13C; U-99% 15N] KNL2, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.02 % sodium azide, 5 mM Magnesium Sulphate 90% H2O/10% D2O 6.5 ambient 298 4 3D 1H-13C NOESY aliphatic 0.2 mM [U-99% 13C; U-99% 15N] KNL2, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.02 % sodium azide, 5 mM Magnesium Sulphate 100% D2O 6.5 ambient 298 5 3D 1H-13C NOESY aromatic 0.2 mM [U-99% 13C; U-99% 15N] KNL2, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.02 % sodium azide, 5 mM Magnesium Sulphate 100% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 automated structure calculation CYANA 3,0 Guntert, Mumenthaler and Wuthrich 2 data analysis NMRView Johnson, One Moon Scientific 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 refinement CYANA