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Human programmed cell death 1 receptor
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 2 2D 1H-13C HSQC 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 3 2D 1H-1H TOCSY 0.5 mM protein, 25 mM potassium phosphate, 100 mM sodium chloride 100% D2O 0.125 6.4 ambient 298 4 2D 1H-1H NOESY 0.5 mM protein, 25 mM potassium phosphate, 100 mM sodium chloride 100% D2O 0.125 6.4 ambient 298 5 3D HNCACB 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 6 3D CBCA(CO)NH 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 7 3D HNCO 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 8 3D HCCH-TOCSY 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 9 3D 1H-15N TOCSY 0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 10 3D 1H-13C NOESY 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298 11 3D 1H-15N NOESY 0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride 95% H2O/5% D2O 0.125 6.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 35 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 data analysis Sparky Goddard 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 5 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman