2M2D

Human programmed cell death 1 receptor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
22D 1H-13C HSQC0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
32D 1H-1H TOCSY0.5 mM protein, 25 mM potassium phosphate, 100 mM sodium chloride100% D2O0.1256.4ambient298
42D 1H-1H NOESY0.5 mM protein, 25 mM potassium phosphate, 100 mM sodium chloride100% D2O0.1256.4ambient298
53D HNCACB0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
63D CBCA(CO)NH0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
73D HNCO0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
83D HCCH-TOCSY0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
93D 1H-15N TOCSY0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
103D 1H-13C NOESY0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
113D 1H-15N NOESY0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride95% H2O/5% D2O0.1256.4ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2BrukerAvance800
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number35
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPINBruker Biospin
2data analysisSPARKYGoddard
3structure solutionCYANAGuntert, Mumenthaler and Wuthrich
4structure solutionAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
5refinementAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman