2M1T
SP-B C-terminal (residues 59-80) peptide in DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate | 95% H2O/5% D2O | 130 | 4.5 | ambient | 315 | |
2 | 2D 1H-1H TOCSY | 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate | 95% H2O/5% D2O | 130 | 4.5 | ambient | 315 | |
3 | 2D 1H-1H NOESY | 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate | 95% H2O/5% D2O | 130 | 4.5 | ambient | 315 | |
4 | 3D 1H-15N TOCSY | 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate | 95% H2O/5% D2O | 130 | 4.5 | ambient | 315 | |
5 | 3D 1H-15N NOESY | 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate | 95% H2O/5% D2O | 130 | 4.5 | ambient | 315 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 600 |
Conformers Submitted Total Number | 6 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | Sparky | Goddard | |
4 | chemical shift assignment | Sparky | Goddard | |
5 | peak picking | Sparky | Goddard | |
6 | structure solution | X-PLOR NIH | 2.32 | Schwieters, Kuszewski, Tjandra and Clore |
7 | refinement | X-PLOR NIH | 2.32 | Schwieters, Kuszewski, Tjandra and Clore |
8 | collection | TopSpin | Bruker Biospin | |
9 | data analysis | TopSpin | Bruker Biospin | |
10 | structure evaluation | MolProbity | Ian W. Davis, Vincent B. Chen, Robert M. Immormino et. al |