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SP-B C-terminal (residues 59-80) peptide in DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate 95% H2O/5% D2O 130 4.5 ambient 315 2 2D 1H-1H TOCSY 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate 95% H2O/5% D2O 130 4.5 ambient 315 3 2D 1H-1H NOESY 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate 95% H2O/5% D2O 130 4.5 ambient 315 4 3D 1H-15N TOCSY 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate 95% H2O/5% D2O 130 4.5 ambient 315 5 3D 1H-15N NOESY 1.2 mM [U-100% 15N] protein, 80 mM [U-100% 2H] DPC, 1 mM TSP, 50 mM sodium phosphate 95% H2O/5% D2O 130 4.5 ambient 315
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 600 Conformers Submitted Total Number 6 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 chemical shift assignment Sparky Goddard 5 peak picking Sparky Goddard 6 structure solution X-PLOR NIH 2.32 Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH 2.32 Schwieters, Kuszewski, Tjandra and Clore 8 collection TopSpin Bruker Biospin 9 data analysis TopSpin Bruker Biospin 10 structure evaluation MolProbity Ian W. Davis, Vincent B. Chen, Robert M. Immormino et. al