Solution NMR analysis of intact KCNE2 in detergent micelles demonstrate a straight transmembrane helix
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.0 mM [U-15N] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 2 | 2D 1H-15N HSQC | 1.0 mM [U-13C; U-15N] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 3 | 2D 1H-15N HSQC | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 4 | 3D HNCO | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 5 | 3D HNCA | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 6 | 3D HN(CO)CA | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 7 | 3D HNCACB | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 8 | 3D HN(COCA)CB | 1.0 mM [U-13C; U-15N; U-2H] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 9 | 3D HBHA(CO)NH | 1.0 mM [U-13C; U-15N] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| 10 | 3D 1H-15N NOESY | 1.0 mM [U-15N] KCNE2 | 90% H2O/10% D2O | 50 | 6.0 | ambient | 308 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 600 |
| 2 | Bruker | DMX | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
| 3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |














