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Structure of module 2 from the E1 domain of C. elegans APL-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 2 3D HNCA 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 3 3D HNCO 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 4 3D HN(CO)CA 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 5 3D HNCACB 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 6 3D HBHA(CO)NH 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 7 3D HCCH-TOCSY 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 8 3D C(CO)NH 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 9 3D 1H-15N NOESY 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 10 3D 1H-13C NOESY aliphatic 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 11 2D 1H-1H NOESY 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303 12 3D CBCA(CO)NH 0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1 90% H2O/10% D2O 10 6.9 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 256 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker AG 2 data analysis XEASY Bartels et al. 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore