2LZG
NMR Structure of Mdm2 (6-125) with Pip-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCA | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
2 | 3D HNCACB | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
3 | 3D CBCA(CO)NH | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
4 | 3D HNCO | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
5 | 3D HN(CO)CA | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
6 | 3D HCCH-TOCSY | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
7 | 3D 1H-15N NOESY | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 | |
8 | 3D 1H-13C NOESY | 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT | 90% H2O/10% D2O | 50 | 7.0 | ambient | 288.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 800 |
2 | Bruker | Avance | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, DGSA-distance geometry simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 5 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | refinement | AMBER | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
4 | structure solution | AMBER | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |