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Solution Structure of Bacterial Intein-Like domain from Clostridium thermocellum
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 2 2D 1H-13C HSQC aliphatic 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 3 2D 1H-13C HSQC aromatic 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 4 3D CBCA(CO)NH 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 5 3D C(CO)NH 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 6 3D HNCO 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 7 3D HNCACB 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 8 3D HBHA(CO)NH 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 9 3D HCCH-TOCSY 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 10 3D HCCH-COSY 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 11 2D 1H-15N HSQC 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 12 3D HN(CA)CO 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 13 3D 1H-15N TOCSY 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 14 3D 1H-15N NOESY 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298 15 3D 1H-13C NOESY aliphatic 1.2 mM [U-99% 13C; U-99% 15N] CthBIL4, 20 mM potassium phosphate 90% H2O/10% D2O 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 structure validation CING Geerten W. Vuister 4 structure solution CYANA 3 Guntert, Mumenthaler and Wuthrich 5 collection VnmrJ Varian 6 chemical shift assignment CCPNMR CCPN