Solution structure of the C-terminal Pdr1-activating domain of the J-protein Zuo1
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-SEPARATED_NOESY | 1.2 mM [U-100% 13C; U-100% 15N] ZUOTIN, 20 mM potassium phosphate, 50 mM sodium chloride, 1 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | AMBIENT | 283 | |
| 2 | 3D_13C- SEPARATED_NOESY | 1.2 mM [U-100% 13C; U-100% 15N] ZUOTIN, 20 mM potassium phosphate, 50 mM sodium chloride, 1 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | AMBIENT | 283 | |
| 3 | 3D_13C- SEPARATED_NOESY (AROMATIC) | 1.2 mM [U-100% 13C; U-100% 15N] ZUOTIN, 20 mM potassium phosphate, 50 mM sodium chloride, 1 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | AMBIENT | 283 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT. STRUCTURES ARE BASED ON A TOTAL OF 1471 NOE CONSTRAINTS (418 INTRA, 272 SEQUENTIAL, 463 MEDIUM, AND 318 LONG RANGE) AND 148 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. | XPLOR-NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | XPLOR-NIH | 2.9.3 | SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJ |
| 2 | collection | TopSpin | 2.1 | Bruker Biospin |
| 3 | processing | NMRPipe | 2007 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 4 | data analysis | XEASY | 1.3 | Bartels et al. |
| 5 | data analysis | GARANT | 2.1 | Bartels, Guntert, Billeter and Wuthrich |
| 6 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 7 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
