2LWE
Solution structure of mutant (T170E) second CARD of human RIG-I
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 300 uM [U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
2 | 3D HNCO | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
3 | 3D HNCACB | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
4 | 3D CBCA(CO)NH | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
5 | 3D HBHA(CO)NH | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
6 | 3D C(CO)NH | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
7 | 3D H(CCO)NH | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 300 uM [U-100% 13C; U-100% 15N] card2 | 95% H2O/5% D2O | 250 | 7.5 | ambient | 298 | |
9 | 3D 1H-13C NOESY aliphatic | 300 uM [U-100% 13C; U-100% 15N] card2 | 100% D2O | 250 | 7.5 | ambient | 298 | |
10 | 3D 1H-13C NOESY aromatic | 300 uM [U-100% 13C; U-100% 15N] card2 | 100% D2O | 250 | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 2100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | Brunger A. T. et.al. | |
2 | refinement | CNS | Brunger A. T. et.al. | |
3 | chemical shift assignment | NMRView | 8.3 | Johnson, One Moon Scientific |
4 | chemical shift assignment | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
5 | chemical shift calculation | ARIA | 2.3 | Linge, O'Donoghue and Nilges |