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Structural model of BAD-1 repeat loop by NMR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 2 2D 1H-13C HSQC 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 3 3D HNCACB 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 4 3D CBCA(CO)NH 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 5 3D HBHA(CO)NH 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 6 3D H(CCO)NH 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 7 3D C(CO)NH 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 8 3D HCCH-TOCSY 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 9 3D 1H-15N NOESY 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 10 2D 1H-13C HSQC aliphatic 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25 11 2D 1H-13C HSQC aromatic 0.1 mM [U-100% 13C; U-100% 15N] TR4, 10 mM potassium phosphate, 0.1 % sodium azide 90% H2O/10% D2O 8.0 ambient 25
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 900 2 Varian VNMRS 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Sparky
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 18 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky Goddard 2 structure solution CYANA CYANA 3.0_intel Guntert, Mumenthaler and Wuthrich 3 refinement CYANA Guntert, Mumenthaler and Wuthrich