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Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 2 2D 1H-13C HSQC 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 3 2D 1H-13C HSQC aliphatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 4 3D CBCA(CO)NH 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 5 3D HNCACB 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 6 3D HNCO 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 7 3D C(CO)NH 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 8 3D H(CCO)NH 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 9 3D HNHA 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 10 3D 1H-15N NOESY 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 11 2D 1H-13C HSQC aliphatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 12 2D 1H-13C HSQC aromatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 13 2D (HB)CB(CGCD)HD aromatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 14 2D (HB)CB(CGCDCE)HE aromatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 15 3D 1H-13C NOESY aliphatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15 16 3D 1H-13C NOESY aromatic 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06 88% H2O/12% D2O 200 7.4 ambient 298.15
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian NMR System 600
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics VnmrJ
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection VnmrJ 2.3A Varian 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView 5.3 Johnson, One Moon Scientific 4 peak picking NMRView 5.3 Johnson, One Moon Scientific 5 chemical shift assignment NMRView 5.3 Johnson, One Moon Scientific 6 automated noe assignment ARIA 2.2 Linge, O'Donoghue and Nilges 7 structure solution ARIA 2.2 Linge, O'Donoghue and Nilges 8 structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 9 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 10 dihedral constraints TALOS Cornilescu, Delaglio and Bax 11 structure analysis Procheck 3.5.4 Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho 12 structure analysis WhatCheck Vriend 13 data analysis MOLMOL 2K.2 Koradi, Billeter and Wuthrich